President
- Professors Association
- Faculty Committee
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- Institute for Convergence Research and Education in Advanced Technology
- Yonsei-IBS Institute
- Institute for Higher Education Innovation
- Ethics and Human Rights Committee
- Institute for Global Engagement and Empowerment
- Office of University Development Strategies
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- Provost
- Executive Vice President for Administration and Development
- Executive Vice President for Medical Affairs
- Chancellor of Mirae Campus
- Executive Vice President for International Campus
- Executive Vice President for Research Affairs
Chancellor of Mirae Campus
- Provost
- Executive Vice President for Administration and Development
- Executive Vice President for Medical Affairs
- Chancellor of Mirae Campus
- Executive Vice President for International Campus
- Executive Vice President for Research Affairs
Wonju Administrative Offices
- Wonju University Chaplain Wonju Research Affairs Wonju Academic Affairs
- Admissions and Promotions Wonju Student Affairs and Services
- Wonju General Affairs Wonju Planning and Public Relations
University/Graduate School
- Graduate School of Government and Business Health and Environment Graduate School
- Liberal Arts College Government and Business College College of Science and Technology
- Health Science and Management East Asia International College
Auxiliary Facilities
- Maeji Housing Office Yonsei Maeji Broadcasting System Yonsei News Health Care Center Sports Center
- Wonju University Church Yonsei Chun-Chu(Wonju) Wonju Social Welfare Center Human Resources Development Center
- Wonju Museum Deokso Farm Wonju Radiation Safety Center Wonju Research and Information Service
Auxiliary Educational Facilities
- Continuing Education and Development
- Wonju Research and Training Institute of Secondary Education
- International Education Center
Affiliated Research Centers
University Wide Research Institutes
- Institute for Poverty alleviation and International Development
- Medical Engineering Institute
Intercollegiate Research Institutes
- Modern Institute of Korean Studies
- Bio Advanced Materials Research Institute
- Medical and Welfare Research Institute
College Affiliated Research Institutes
- Institute of Basic Science Eco-Culture Design Institute
- Environmental Science and Technology Institute
- Health Science Institute
Wonju Medical Center
- International Education Center Hair and Cosmetic Medical Lab
- Wonju Christian Hospital Basic Medical Lab
- Career Medical Lab